A Shiny app to perform for accurate estimation of vaccine induced cellular immunogenicity with bivariate linear modeling. Available at https://shiny-vici.apps.math.cnrs.fr/, or locally through the
vici R package.
An R package to perform conditional independence testing using empirical conditional cumulative distribution function estimations for single-cell RNA-seq differential expression analysis. Available on GitHub.
An R package to perform (parallelized) optimization of convex multiparametric functions developed with Viviane Philips, Mélanie Prague & Cécile Proust-Lima. Available on CRAN, development version on GitHub.
An R package to perform Dirichlet process mixture of multivariate normal, skew-normal or skew $t$-distributions modeling oriented towards flow-cytometry data preprocessing applications, using C++ code to speed up computations. Available on CRAN, development version on GitHub.
An R package to perform automatic instant phenotype prediction at the visit level from EHR data that can be used for either chronic or acute conditions, developed with Thomas Ferte. Available on CRAN, development version on gitlab.
An R package to perform gene set analysis of longitudinal RNA-seq data with variance component score test, accounting for data heteroscedasticity through precision weights. Available on CRAN, development version on GitHub.
All illustrations (except
CytOpt) by Jérôme Dubois.