Software

• cytometree an R package to perform Automatic gating and annotation of cytometry data. Available on CRAN, development version available on github.

• kernscr an R package to perform KERNel machine score test for pathway analysis in the presence of Semi-Competing Risks. Available on CRAN, development version available on github.

• ludic an R package to perform probabilistic record Linkage Using only DIagnosis Codes without direct identifiers, using C++ code to speed up computations. Available on CRAN, development version on github.

• NPflow an R package to perform Dirichlet process mixture of multivariate normal, skew-normal or skew $t$-distributions modeling oriented towards flow-cytometry data preprocessing applications, using C++ code to speed up computations. Available on CRAN, development version on github.

• TcGSA an R package to analyze longitudinal gene-expression data at the gene set level. Available on CRAN, development version on github.

• tcgsaseq an R package to perform gene set analysis of longitudinal RNA-seq data with variance component score test, accounting for data heteroscedasticity through precision weights. Available on CRAN, development version on github.